2JOU Surface Active Protein date Mar 26, 2007
title Nmr Structure Of Mini-B, An N-Terminal- C-Terminal Construct From Human Surfactant Protein-B (Sp-B), In Hexafluoroisopropanol (Hfip)
authors V.Booth, M.Sarker, K.M.W.Keough, A.J.Waring, F.J.Walther
compound source
Molecule: Pulmonary Surfactant-Associated Protein B
Chain: A
Fragment: Mini-B
Synonym: Sp-B, 6 Kda Protein, Pulmonary Surfactant- Associated Proteolipid Splphe, 18 Kda Pulmonary-Surfactant Protein;
Engineered: Yes
 Synthetic: Yes
Other_details: This Sequence Is A Biologically Active Fragment (N- And C-Terminal) Of The Naturally Occuring Human Protein, Sp-B.
methodSolution NMR
note 2JOU supersedes 2A2H
Primary referenceStructure of mini-B, a functional fragment of surfactant protein B, in detergent micelles., Sarker M, Waring AJ, Walther FJ, Keough KM, Booth V, Biochemistry. 2007 Oct 2;46(39):11047-56. Epub 2007 Sep 11. PMID:17845058
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (144 Kb) [Save to disk]
  • CSU: Contacts of Structural Units for 2JOU
  • Original NMR restraints for 2JOU from PDB
  • Retrieve 2JOU in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2JOU from S2C, [Save to disk]
    • View 2JOU in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • On AstexViewer, from MSD-EBI (viewer documentation).
  • On RasMol (Install RasMol freeware) Here's help on how to use RasMol.
    • Visual 3D analysis of 2JOU
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 2JOU, from MSDmotif at EBI
  • Fold representative 2jou from FSSP and Dali (Families of Structurally Similar Proteins)
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2jou_A]
  • SWISS-PROT database: [P07988]
  • Domain organization of [PSPB_HUMAN] by SWISSPFAM
  • Alignments of the sequence of 2JOU with the sequences similar proteins can be viewed for 2JOU's classification [PSPB_HUMAN] at ProtoMap. Click on "Neighbors List", then on the "See Alignments" button below the list.
  • A sequence distance tree ("phylogenetic tree") can be viewed for 1ACL's classification [PSPB_HUMAN] at ProtoMap. Click on the Cluster number.
    • Other resources with information on 2JOU
  • Community annotation for 2JOU at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

    • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2010
    Bioinformatics Unit
    Weizmann Institute of Science