2JPA Transcription Dna date May 01, 2007
title Structure Of The Wilms Tumor Suppressor Protein Zinc Finger Bound To Dna
authors R.Stoll, B.M.Lee, E.W.Debler, J.H.Laity, I.A.Wilson, H.J.Dyson, P.
compound source
Molecule: Dna (5'- D(Pdcpdgpdcpdgpdgpdgpdgpdgpdcpdgpdtpdcpdtpdg)
Chain: B
Engineered: Yes
Synthetic: Yes
Organism_scientific: Synthetic Construct
Organism_taxid: 32630

Molecule: Dna (5'- D(Pdcpdapdgpdapdcpdgpdcpdcpdcpdcpdcpdgpdcpdg)
Chain: C
Engineered: Yes

Synthetic: Yes
Organism_scientific: Synthetic Construct
Organism_taxid: 32630

Molecule: Wilms Tumor 1
Chain: A
Fragment: Residues 174-291
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Wt1
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_vector_type: Plasmid
Expression_system_vector: Pet21d
methodSolution NMR
ligand ZN enzyme
Primary referenceStructure of the wilms tumor suppressor protein zinc finger domain bound to DNA., Stoll R, Lee BM, Debler EW, Laity JH, Wilson IA, Dyson HJ, Wright PE, J Mol Biol. 2007 Oct 5;372(5):1227-45. Epub 2007 Jul 21. PMID:17716689
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (971 Kb) [Save to disk]
  • Biological Unit Coordinates (2jpa.pdb1.gz) 49 Kb
  • LPC: Ligand-Protein Contacts for 2JPA
  • CSU: Contacts of Structural Units for 2JPA
  • Original NMR restraints for 2JPA from PDB
  • Retrieve 2JPA in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2JPA from S2C, [Save to disk]
  • View 2JPA in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2JPA
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 2JPA, from MSDmotif at EBI
  • Fold representative 2jpa from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2jpa_B] [2jpa_C] [2jpa_A] [2jpa]
  • SWISS-PROT database: [P19544]
  • Domain organization of [WT1_HUMAN] by SWISSPFAM
  • Domain found in 2JPA: [ZnF_C2H2 ] by SMART
  • Other resources with information on 2JPA
  • Community annotation for 2JPA at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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