2JPH Signaling Protein, Protein Binding date May 11, 2007
title Nmr Solution Structure Of The Rho Gtpase Binding Domain Of H Plexin-B1
authors Y.Tong, M.Buck
compound source
Molecule: Plexin-B1
Chain: A
Fragment: Sequence Database Residues 1743-1862
Synonym: Semaphorin Receptor Sep
Engineered: Yes
Mutation: Yes
 Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Plxnb1, Kiaa0407, Sep
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_strain: Bl21 (De3)
Expression_system_vector_type: Vector
Expression_system_vector: Pet11a
methodSolution NMR
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceInsights into oncogenic mutations of plexin-B1 based on the solution structure of the Rho GTPase binding domain., Tong Y, Hota PK, Hamaneh MB, Buck M, Structure. 2008 Feb;16(2):246-58. PMID:18275816
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (624 Kb) [Save to disk]
  • Biological Unit Coordinates (2jph.pdb1.gz) 33 Kb
  • CSU: Contacts of Structural Units for 2JPH
  • Retrieve 2JPH in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2JPH from S2C, [Save to disk]
    • View 2JPH in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 2JPH
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2JPH, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2jph_A] [2jph]
  • SWISS-PROT database: [O43157]
  • Domain organization of [PLXB1_HUMAN] by SWISSPFAM
    • Other resources with information on 2JPH
  • Community annotation for 2JPH at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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