2JQ8 Cell Adhesion date May 30, 2007
title Solution Structure Of The Somatomedin B Domain From Vitronectin Produced In Pichia Pastoris
authors H.Gaardsvoll, D.Hirschberg, S.Nielbo, A.Mayasundari, C.B.Peterson, A.Jansson, T.J.D.Jorgensen, F.M.Poulsen
compound source
Molecule: Vitronectin
Chain: A
Fragment: Sequence Database Residues 20-66
Synonym: Serum-Spreading Factor, S-Protein, V75
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Vtn
Expression_system: Pichia Pastoris
Expression_system_taxid: 4922
Expression_system_strain: X-33
Expression_system_vector_type: Vector
Expression_system_vector: Ppiczalpha A
methodSolution NMR
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceSolution structure of recombinant somatomedin B domain from vitronectin produced in Pichia pastoris., Kjaergaard M, Gardsvoll H, Hirschberg D, Nielbo S, Mayasundari A, Peterson CB, Jansson A, Jorgensen TJ, Poulsen FM, Ploug M, Protein Sci. 2007 Sep;16(9):1934-45. PMID:17766387
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (231 Kb) [Save to disk]
  • CSU: Contacts of Structural Units for 2JQ8
  • Original NMR restraints for 2JQ8 from PDB
  • Retrieve 2JQ8 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2JQ8 from S2C, [Save to disk]
  • View 2JQ8 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2JQ8
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 2JQ8, from MSDmotif at EBI
  • Fold representative 2jq8 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2jq8] [2jq8_A]
  • SWISS-PROT database: [P04004]
  • Domain organization of [VTNC_HUMAN] by SWISSPFAM
  • Domain found in 2JQ8: [SO ] by SMART
  • Other resources with information on 2JQ8
  • Community annotation for 2JQ8 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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