2JS0 Signaling Protein date Jun 29, 2007
title Solution Structure Of Second Sh3 Domain Of Adaptor Nck
authors M.J.Hake, K.Choowongkomon, C.R.Carlin, F.D.Sonnichsen
compound source
Molecule: Cytoplasmic Protein Nck1
Chain: A
Fragment: Sh3 2
Synonym: Nck Adaptor Protein 1, Sh2sh3 Adaptor Protein Nck-Alpha;
Engineered: Yes
 Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Nck1, Nck
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_strain: Bl21 (De3)
Expression_system_vector: Pgev2
methodSolution NMR
Primary referenceSpecificity Determinants of a Novel Nck Interaction with the Juxtamembrane Domain of the Epidermal Growth Factor Receptor(,)., Hake MJ, Choowongkomon K, Kostenko O, Carlin CR, Sonnichsen FD, Biochemistry. 2008 Feb 13;. PMID:18269246
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (316 Kb) [Save to disk]
  • CSU: Contacts of Structural Units for 2JS0
  • Original NMR restraints for 2JS0 from PDB
  • Retrieve 2JS0 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2JS0 from S2C, [Save to disk]
    • View 2JS0 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • On AstexViewer, from MSD-EBI (viewer documentation).
  • On RasMol (Install RasMol freeware) Here's help on how to use RasMol.
    • Visual 3D analysis of 2JS0
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 2JS0, from MSDmotif at EBI
  • Fold representative 2js0 from FSSP and Dali (Families of Structurally Similar Proteins)
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2js0_A]
  • SWISS-PROT database: [P16333]
  • Domain organization of [NCK1_HUMAN] by SWISSPFAM
  • Domain found in 2JS0: [SH3 ] by SMART
  • Alignments of the sequence of 2JS0 with the sequences similar proteins can be viewed for 2JS0's classification [NCK1_HUMAN] at ProtoMap. Click on "Neighbors List", then on the "See Alignments" button below the list.
  • A sequence distance tree ("phylogenetic tree") can be viewed for 1ACL's classification [NCK1_HUMAN] at ProtoMap. Click on the Cluster number.
    • Other resources with information on 2JS0
  • Community annotation for 2JS0 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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