2JSD Hydrolase date Jul 03, 2007
title Solution Structure Of Mmp20 Complexed With Nngh
authors Y.Arendt, L.Banci, I.Bertini, F.Cantini, R.Cozzi, R.Del Conte, L.Gonnelli, Structural Proteomics In Europe (Spine)
compound source
Molecule: Matrix Metalloproteinase-20
Chain: A
Fragment: Catalytic Domain, Residues 113-272
Synonym: Mmp-20, Enamel Metalloproteinase, Enamelysin
Ec: 3.4.24.-
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Tissue: Odontoblast
Gene: Mmp20
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet21a
methodSolution NMR
ligand CA, NGH, ZN enzyme Hydrolase E.C.3.4.24 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceCatalytic domain of MMP20 (Enamelysin) - the NMR structure of a new matrix metalloproteinase., Arendt Y, Banci L, Bertini I, Cantini F, Cozzi R, Del Conte R, Gonnelli L, FEBS Lett. 2007 Oct 2;581(24):4723-6. Epub 2007 Sep 6. PMID:17869250
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (820 Kb) [Save to disk]
  • LPC: Ligand-Protein Contacts for 2JSD
  • CSU: Contacts of Structural Units for 2JSD
  • Original NMR restraints for 2JSD from PDB
  • Retrieve 2JSD in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2JSD from S2C, [Save to disk]
  • View 2JSD in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2JSD
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 2JSD, from MSDmotif at EBI
  • Fold representative 2jsd from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2jsd] [2jsd_A]
  • SWISS-PROT database: [O60882]
  • Domain organization of [MMP20_HUMAN] by SWISSPFAM
  • Domain found in 2JSD: [ZnMc ] by SMART
  • Alignments of the sequence of 2JSD with the sequences similar proteins can be viewed for 2JSD's classification [MMP20_HUMAN] at ProtoMap. Click on "Neighbors List", then on the "See Alignments" button below the list.
  • A sequence distance tree ("phylogenetic tree") can be viewed for 1ACL's classification [MMP20_HUMAN] at ProtoMap. Click on the Cluster number.
  • Other resources with information on 2JSD
  • Community annotation for 2JSD at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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