2JTD Cell Adhesion date Jul 27, 2007
title Skelemin Immunoglobulin C2 Like Domain 4
authors L.Deshmukh, O.Vinogradova
compound source
Molecule: Myomesin-1
Chain: A
Fragment: Residues:1207-1328
Synonym: Skelemin
Engineered: Yes
 Organism_scientific: Mus Musculus
Organism_common: House Mouse
Organism_taxid: 10090
Gene: Myom1
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_vector_type: Plasmid
Expression_system_vector: Pet15b
methodSolution NMR
Primary referenceStructural insight into the interaction between platelet integrin alphaIIbbeta3 and cytoskeletal protein skelemin., Deshmukh L, Tyukhtenko S, Liu J, Fox JE, Qin J, Vinogradova O, J Biol Chem. 2007 Nov 2;282(44):32349-56. Epub 2007 Sep 5. PMID:17804417
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (777 Kb) [Save to disk]
  • Biological Unit Coordinates (2jtd.pdb1.gz) 39 Kb
  • CSU: Contacts of Structural Units for 2JTD
  • Original NMR restraints for 2JTD from PDB
  • Retrieve 2JTD in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2JTD from S2C, [Save to disk]
    • View 2JTD in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 2JTD
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2JTD, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2jtd] [2jtd_A]
  • SWISS-PROT database: [Q62234]
  • Domain organization of [MYOM1_MOUSE] by SWISSPFAM
    • Other resources with information on 2JTD
  • Community annotation for 2JTD at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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