2JTG Metal Binding Protein date Jul 31, 2007
title Solution Structure Of The Thap-Zinc Finger Of Thap1
authors D.Bessiere, S.Campagne, A.Milon, V.Gervais
compound source
Molecule: Thap Domain-Containing Protein 1
Chain: A
Fragment: Thap Domain, Residues 1-82
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Thap1
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet-26
methodSolution NMR
ligand ZN enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceStructure-function analysis of the THAP zinc finger of THAP1, a large C2CH DNA-binding module linked to Rb/E2F pathways., Bessiere D, Lacroix C, Campagne S, Ecochard V, Guillet V, Mourey L, Lopez F, Czaplicki J, Demange P, Milon A, Girard JP, Gervais V, J Biol Chem. 2008 Feb 15;283(7):4352-63. Epub 2007 Dec 11. PMID:18073205
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (481 Kb) [Save to disk]
  • Biological Unit Coordinates (2jtg.pdb1.gz) 24 Kb
  • LPC: Ligand-Protein Contacts for 2JTG
  • CSU: Contacts of Structural Units for 2JTG
  • Retrieve 2JTG in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2JTG from S2C, [Save to disk]
  • View 2JTG in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2JTG
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2JTG, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2jtg] [2jtg_A]
  • SWISS-PROT database: [Q9NVV9]
  • Domain organization of [THAP1_HUMAN] by SWISSPFAM
  • Domains found in 2JTG: [DM3] [THAP ] by SMART
  • Other resources with information on 2JTG
  • Community annotation for 2JTG at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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