2JVX Metal Binding Protein date Sep 28, 2007
title Solution Structure Of Human Nemo Zinc Finger
authors F.Cordier, E.Vinolo, M.Veron, M.Delepierre, F.Agou
compound source
Molecule: Nf-Kappa-B Essential Modulator
Chain: A
Fragment: Zinc Finger Domain
Synonym: Nemo, Nf-Kappa-B Essential Modifier, Inhibitor Of Nuclear Factor Kappa-B Kinase Subunit Gamma, Ikb Kinase Subunit Gamma, I-Kappa-B Kinase Gamma, Ikk-Gamma, Ikkg, Ikb Kinase-Associated Protein 1, Ikkap1, Fip-3;
Engineered: Yes
Synthetic: Yes
Other_details: Synthetic Peptide, Termini-Blocked By N- Acetyl And C-Amide Groups
methodSolution NMR
ligand ZN enzyme
Primary referenceSolution Structure of NEMO Zinc Finger and Impact of an Anhidrotic Ectodermal Dysplasia with Immunodeficiency-related Point Mutation., Cordier F, Vinolo E, Veron M, Delepierre M, Agou F, J Mol Biol. 2008 Jan 30;. PMID:18313693
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (82 Kb) [Save to disk]
  • LPC: Ligand-Protein Contacts for 2JVX
  • CSU: Contacts of Structural Units for 2JVX
  • Original NMR restraints for 2JVX from PDB
  • Retrieve 2JVX in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2JVX from S2C, [Save to disk]
  • View 2JVX in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2JVX
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 2JVX, from MSDmotif at EBI
  • Fold representative 2jvx from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2jvx_A] [2jvx]
  • SWISS-PROT database: [Q9Y6K9]
  • Domain organization of [NEMO_HUMAN] by SWISSPFAM
  • Alignments of the sequence of 2JVX with the sequences similar proteins can be viewed for 2JVX's classification [NEMO_HUMAN] at ProtoMap. Click on "Neighbors List", then on the "See Alignments" button below the list.
  • A sequence distance tree ("phylogenetic tree") can be viewed for 1ACL's classification [NEMO_HUMAN] at ProtoMap. Click on the Cluster number.
  • Other resources with information on 2JVX
  • Community annotation for 2JVX at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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