2JW6 Transcription date Oct 08, 2007
title Solution Structure Of The Deaf1 Mynd Domain
authors R.Spadaccini, H.Perrin, M.Bottomley, S.Ansieu, M.Sattler
compound source
Molecule: Deformed Epidermal Autoregulatory Factor 1 Homolo
Chain: A
Fragment: Mynd Domain
Synonym: Nuclear Deaf-1- Related Transcriptional Regulator, Suppressin, Zinc Finger Mynd Domain-Containing Protein 5;
Engineered: Yes
 Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet24d
methodSolution NMR
ligand ZN enzyme
note 2JW6 is a representative structure and supersedes 2FV6
Primary referenceRetraction notice to "Structure and functional analysis of the MYND domain" [J. Mol. Biol. (2006) 358, 498-508]., Spadaccini R, Perrin H, Bottomley MJ, Ansieau S, Sattler M, J Mol Biol. 2008 Mar 7;376(5):1523. PMID:18286714
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (119 Kb) [Save to disk]
  • Biological Unit Coordinates (2jw6.pdb1.gz) 12 Kb
  • LPC: Ligand-Protein Contacts for 2JW6
  • CSU: Contacts of Structural Units for 2JW6
  • Original NMR restraints for 2JW6 from PDB
  • Retrieve 2JW6 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2JW6 from S2C, [Save to disk]
    • View 2JW6 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 2JW6
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2JW6, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2jw6] [2jw6_A]
  • SWISS-PROT database: [O75398]
  • Domain organization of [DEAF1_HUMAN] by SWISSPFAM
    • Other resources with information on 2JW6
  • Community annotation for 2JW6 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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