2JWA Transferase date Oct 09, 2007
title Erbb2 Transmembrane Segment Dimer Spatial Structure
authors K.S.Mineev, E.V.Bocharov, A.S.Arseniev
compound source
Molecule: Receptor Tyrosine-Protein Kinase Erbb-2
Chain: A, B
Fragment: Unp Residues 641-684
Synonym: P185erbb2, C-Erbb-2, Neu Proto-Oncogene, Tyrosine Kinase-Type Cell Surface Receptor Her2, Mln 19, Cd340 Antigen;
Ec: 2.7.10.1
Engineered: Yes
 Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Erbb2, Her2, Neu, Ngl
Expression_system: Escherichia Coli
Expression_system_taxid: 562
methodSolution NMR
ligand
enzyme Transferase E.C.2.7.10.1 BRENDA
note 2JWA (Molecule of the Month:pdb126)
subcellular loc. Membrane localization by OPM: Eukaryotic plasma membrane
extracellular side
cytoplasmic side
Primary referenceSpatial structure of dimeric transmembrane domain of the growth factor receptor ErbB2 presumably corresponding to the receptor active state., Bocharov EV, Mineev KS, Volynsky PE, Ermolyuk YS, Tkach EN, Sobol AG, Chupin VV, Kirpichnikov MP, Efremov RG, Arseniev AS, J Biol Chem. 2008 Jan 4;. PMID:18178548
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (338 Kb) [Save to disk]
  • CSU: Contacts of Structural Units for 2JWA
  • Original NMR restraints for 2JWA from PDB
  • Retrieve 2JWA in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2JWA from S2C, [Save to disk]
    • View 2JWA in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • On AstexViewer, from MSD-EBI (viewer documentation).
  • On RasMol (Install RasMol freeware) Here's help on how to use RasMol.
    • Visual 3D analysis of 2JWA
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 2JWA, from MSDmotif at EBI
  • Fold representative 2jwa from FSSP and Dali (Families of Structurally Similar Proteins)
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2jwa_A] [2jwa_B]
  • SWISS-PROT database: [P04626]
  • Domain organization of [ERBB2_HUMAN] by SWISSPFAM
  • Alignments of the sequence of 2JWA with the sequences similar proteins can be viewed for 2JWA's classification [ERBB2_HUMAN] at ProtoMap. Click on "Neighbors List", then on the "See Alignments" button below the list.
  • A sequence distance tree ("phylogenetic tree") can be viewed for 1ACL's classification [ERBB2_HUMAN] at ProtoMap. Click on the Cluster number.
    • Other resources with information on 2JWA
  • Community annotation for 2JWA at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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