2JX3 Dna Binding Protein date Nov 02, 2007
title Nmr Solution Structure Of The N-Terminal Domain Of Dek
authors H.Matsuo, M.Devany
compound source
Molecule: Protein Dek
Chain: A
Fragment: Sap Domain
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Dek
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Vector
Expression_system_vector: Pet28a
methodSolution NMR
Primary referenceSolution NMR structure of the N-terminal domain of the human DEK protein., Devany M, Kappes F, Chen KM, Markovitz DM, Matsuo H, Protein Sci. 2008 Feb;17(2):205-15. PMID:18227428
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (312 Kb) [Save to disk]
  • CSU: Contacts of Structural Units for 2JX3
  • Original NMR restraints for 2JX3 from PDB
  • Retrieve 2JX3 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2JX3 from S2C, [Save to disk]
  • View 2JX3 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2JX3
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 2JX3, from MSDmotif at EBI
  • Fold representative 2jx3 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2jx3_A] [2jx3]
  • SWISS-PROT database: [P35659]
  • Domain organization of [DEK_HUMAN] by SWISSPFAM
  • Domain found in 2JX3: [SAP ] by SMART
  • Other resources with information on 2JX3
  • Community annotation for 2JX3 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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