2JY6	Signaling Protein	date	Dec 06, 2007
title	Solution Structure Of The Complex Of Ubiquitin And Ubiquilin Domain
authors	D.Zhang, S.Raasi, D.Fushman
compound		source
Molecule: Ubiquitin Protein Chain: A Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Ubi1, Rpl40a Expression_system: Escherichia Coli Bl21 Expression_system_taxid: 511693 Expression_system_strain: Bl21 Expression_system_vector_type: Vector Expression_system_vector: Pet4a
Molecule: Ubiquilin-1 Chain: B Synonym: Protein Linking Iap With Cytoskeleton 1, Plic-1, H Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Ubqln1, Da41, Plic1 Expression_system: Escherichia Coli Bl21 Expression_system_taxid: 511693 Expression_system_strain: Bl21 Expression_system_vector_type: Vector Expression_system_vector: Pgex-4t1
method	Solution NMR
Primary reference	Affinity makes the difference: nonselective interaction of the UBA domain of Ubiquilin-1 with monomeric ubiquitin and polyubiquitin chains., Zhang D, Raasi S, Fushman D, J Mol Biol. 2008 Mar 14;377(1):162-80. Epub 2007 Dec 23. PMID:18241885

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (338 Kb) [Save to disk] Biological Unit Coordinates (2jy6.pdb1.gz) 33 Kb CSU: Contacts of Structural Units for 2JY6 Retrieve 2JY6 in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 2JY6 from S2C, [Save to disk]

View 2JY6 in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 2JY6

Ramachandran plot from PDBSum

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 2JY6, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [2jy6_A] [2jy6] [2jy6_B] SWISS-PROT database: [P62988] [Q9UMX0] Domain organization of [UBIQ_HUMAN] [UBQL1_HUMAN] by SWISSPFAM Domains found in 2JY6: [UBA] [UBQ ] by SMART

Other resources with information on 2JY6

Community annotation for 2JY6 at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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