2JYO Cytokine date Dec 14, 2007
title Nmr Solution Structure Of Human Mip-3alphaccl20
authors D.I.Chan, H.N.Hunter, B.F.Tack, H.J.Vogel
compound source
Molecule: C-C Motif Chemokine 20 (Small-Inducible Cytokine A20) (Macrophage Inflammatory Protein 3 Alpha) (Mip-3- Alpha) (Liver And Activation-Regulated Chemokine) (Cc Chemokine Larc) (Beta Chemokine Exodus-1);
Chain: A
Engineered: Yes
 Synthetic: Yes
methodSolution NMR
Gene
Ontology
ChainFunctionProcessComponent
A
  • cytokine activity
  • chemokine activity
  • chemotaxis
  • inflammatory response
  • immune response
  • signal transduction
  • cell-cell signaling
  • chemokinesis
  • defense response to bacteriu...
  • extracellular region
  • extracellular space
    • Primary referenceHuman Macrophage Inflammatory Protein-3{alpha}: Protein and Peptide NMR Solution Structures, Dimerization, Dynamics and Anti-Infective Properties., Chan DI, Hunter HN, Tack BF, Vogel HJ, Antimicrob Agents Chemother. 2007 Dec 17;. PMID:18086840
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (385 Kb) [Save to disk]
  • CSU: Contacts of Structural Units for 2JYO
  • Original NMR restraints for 2JYO from PDB
  • Retrieve 2JYO in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2JYO from S2C, [Save to disk]
    • View 2JYO in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • On AstexViewer, from MSD-EBI (viewer documentation).
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    • Visual 3D analysis of 2JYO
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 2JYO, from MSDmotif at EBI
  • Fold representative 2jyo from FSSP and Dali (Families of Structurally Similar Proteins)
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2jyo_A]
  • SWISS-PROT database: [P78556]
  • Domain organization of [CCL20_HUMAN] by SWISSPFAM
  • Domain found in 2JYO: [SCY ] by SMART
  • Alignments of the sequence of 2JYO with the sequences similar proteins can be viewed for 2JYO's classification [CCL20_HUMAN] at ProtoMap. Click on "Neighbors List", then on the "See Alignments" button below the list.
  • A sequence distance tree ("phylogenetic tree") can be viewed for 1ACL's classification [CCL20_HUMAN] at ProtoMap. Click on the Cluster number.
    • Other resources with information on 2JYO
  • Community annotation for 2JYO at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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