2JYU Cytokine date Dec 19, 2007
title Human Granulin C, Isomer 2
authors D.Tolkatchev, P.Wang, Z.Chen, P.Xu, F.Ni
compound source
Molecule: Granulin-5
Chain: A
Synonym: Granulin C
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Grn
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Origami(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet-32
methodSolution NMR
Primary referenceStructure dissection of human progranulin identifies well-folded granulin/epithelin modules with unique functional activities., Tolkatchev D, Malik S, Vinogradova A, Wang P, Chen Z, Xu P, Bennett HP, Bateman A, Ni F, Protein Sci. 2008 Apr;17(4):711-24. PMID:18359860
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (158 Kb) [Save to disk]
  • Biological Unit Coordinates (2jyu.pdb1.gz) 16 Kb
  • CSU: Contacts of Structural Units for 2JYU
  • Original NMR restraints for 2JYU from PDB
  • Retrieve 2JYU in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2JYU from S2C, [Save to disk]
  • View 2JYU in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2JYU
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2JYU, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2jyu] [2jyu_A]
  • SWISS-PROT database: [P28799]
  • Domain organization of [GRN_HUMAN] by SWISSPFAM
  • Domain found in 2JYU: [GRAN ] by SMART
  • Other resources with information on 2JYU
  • Community annotation for 2JYU at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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