2JYW Hydrolase date Dec 20, 2007
title Solution Structure Of C-Terminal Domain Of Apobec3g
authors K.Chen, E.Harjes, P.J.Gross, A.Fahmy, Y.Lu, K.Shindo, R.S.Harris, H.Matsuo
compound source
Molecule: Dna Dc->Du-Editing Enzyme Apobec-3g
Chain: A
Fragment: C-Terminal Domain
Synonym: Apobec-Related Cytidine Deaminase, Arcd, Apobec- Related Protein, Arp-9, Cem15, Cem-15;
Ec: 3.5.4.-
Engineered: Yes
Mutation: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Apobec3g
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pgex6p2_a3g198-384
methodSolution NMR
ligand ZN enzyme Hydrolase E.C.3.5.4 BRENDA

Primary referenceStructure of the DNA deaminase domain of the HIV-1 restriction factor APOBEC3G., Chen KM, Harjes E, Gross PJ, Fahmy A, Lu Y, Shindo K, Harris RS, Matsuo H, Nature. 2008 Mar 6;452(7183):116-9. Epub 2008 Feb 20. PMID:18288108
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (510 Kb) [Save to disk]
  • LPC: Ligand-Protein Contacts for 2JYW
  • CSU: Contacts of Structural Units for 2JYW
  • Retrieve 2JYW in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2JYW from S2C, [Save to disk]
  • View 2JYW in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2JYW
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 2JYW, from MSDmotif at EBI
  • Fold representative 2jyw from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2jyw_A] [2jyw]
  • SWISS-PROT database: [Q9HC16]
  • Domain organization of [ABC3G_HUMAN] by SWISSPFAM
  • Other resources with information on 2JYW
  • Community annotation for 2JYW at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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