2K07 Structural Genomics, Unknown Function date Jan 25, 2008
title Solution Nmr Structure Of Human E2-Like Ubiquitin-Fold Modifier Conjugating Enzyme 1 (Ufc1). Northeast Structural Genomics Consortium Target Hr41
authors G.Liu, A.Eletsky, H.S.Atreya, J.M.Aramini, R.Xiao, T.Acton, G.T.Montelione, T.Szyperski, Northeast Structural Genomics Consortium (Nesg)
compound source
Molecule: Ufm1-Conjugating Enzyme 1
Chain: A
Synonym: Ubiquitin-Fold Modifier-Conjugating Enzyme 1
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Ufc1
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet21
methodSolution NMR
note 2K07 supersedes 1YWZ
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceNMR and X-RAY structures of human E2-like ubiquitin-fold modifier conjugating enzyme 1 (UFC1) reveal structural and functional conservation in the metazoan UFM1-UBA5-UFC1 ubiquination pathway., Liu G, Forouhar F, Eletsky A, Atreya HS, Aramini JM, Xiao R, Huang YJ, Abashidze M, Seetharaman J, Liu J, Rost B, Acton T, Montelione GT, Hunt JF, Szyperski T, J Struct Funct Genomics. 2009 Apr;10(2):127-36. Epub 2008 Dec 20. PMID:19101823
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (970 Kb) [Save to disk]
  • CSU: Contacts of Structural Units for 2K07
  • Original NMR restraints for 2K07 from PDB
  • Retrieve 2K07 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2K07 from S2C, [Save to disk]
  • View 2K07 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2K07
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 2K07, from MSDmotif at EBI
  • Fold representative 2k07 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2k07_A] [2k07]
  • SWISS-PROT database: [Q9Y3C8]
  • Domain organization of [UFC1_HUMAN] by SWISSPFAM
  • Other resources with information on 2K07
  • Community annotation for 2K07 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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