2K1J Gene Regulation date Mar 05, 2008
title Plan Homeodomain Finger Of Tumour Supressor Ing4
authors A.Palacios, P.Garcia, D.Padro, E.Lopez-Hernandez, F.J.Blanco
compound source
Molecule: Inhibitor Of Growth Protein 4
Chain: A
Fragment: Phd-Type Zinc-Finger, Unp Residues 188-249
Synonym: P29ing4
Engineered: Yes
 Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Ing4
Expression_system: Escherichia Coli Bl21
Expression_system_taxid: 511693
Expression_system_strain: Bl21
Expression_system_vector: Pet11d
methodSolution NMR
ligand ZN enzyme
note 2K1J supersedes 2JMQ
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceSolution structure and NMR characterization of the binding to methylated histone tails of the plant homeodomain finger of the tumour suppressor ING4., Palacios A, Garcia P, Padro D, Lopez-Hernandez E, Martin I, Blanco FJ, FEBS Lett. 2006 Dec 22;580(30):6903-8. Epub 2006 Nov 30. PMID:17157298
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (420 Kb) [Save to disk]
  • Biological Unit Coordinates (2k1j.pdb1.gz) 17 Kb
  • LPC: Ligand-Protein Contacts for 2K1J
  • CSU: Contacts of Structural Units for 2K1J
  • Original NMR restraints for 2K1J from PDB
  • Retrieve 2K1J in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2K1J from S2C, [Save to disk]
    • View 2K1J in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 2K1J
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2K1J, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2k1j_A] [2k1j]
  • SWISS-PROT database: [Q9UNL4]
  • Domain organization of [ING4_HUMAN] by SWISSPFAM
  • Domain found in 2K1J: [PHD ] by SMART
    • Other resources with information on 2K1J
  • Community annotation for 2K1J at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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