2K27 Transcription Regulator date Mar 26, 2008
title Solution Structure Of Human Pax8 Paired Box Domain
authors L.Codutti, G.Esposito, A.Corazza, F.Fogolari, G.Tell, C.Vascotto, H.Van Ingen, R.Boelens, P.Viglino, F.Quadrifoglio
compound source
Molecule: Paired Box Protein Pax-8
Chain: A
Fragment: Pax8 Paired Box Domain (Unp Residues 1-143)
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Gene: Pax8
Expression_system: Escherichia Coli
Expression_system_strain: Bl21-De3
Expression_system_vector_type: Plasmid
Expression_system_vector: Pivex2.3
Expression_system_plasmid: Plyss
methodSolution NMR
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceThe solution structure of DNA-free Pax-8 Paired Box domain accounts for redox regulation of transcriptional activity in Pax protein family., Codutti L, van Ingen H, Vascotto C, Fogolari F, Corazza A, Tell G, Quadrifoglio F, Viglino P, Boelens R, Esposito G, J Biol Chem. 2008 Sep 30. PMID:18829450
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (966 Kb) [Save to disk]
  • CSU: Contacts of Structural Units for 2K27
  • Original NMR restraints for 2K27 from PDB
  • Retrieve 2K27 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2K27 from S2C, [Save to disk]
  • View 2K27 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2K27
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 2K27, from MSDmotif at EBI
  • Fold representative 2k27 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2k27] [2k27_A]
  • SWISS-PROT database: [Q06710]
  • Domain organization of [PAX8_HUMAN] by SWISSPFAM
  • Domain found in 2K27: [PAX ] by SMART
  • Other resources with information on 2K27
  • Community annotation for 2K27 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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