2K2G Hydrolase date Apr 01, 2008
title Solution Structure Of The Wild-Type Catalytic Domain Of Human Matrix Metalloproteinase 12 (Mmp-12) In Complex With A Tight-Binding Inhibitor
authors M.A.Markus, B.Dwyer, S.Wolfrom, J.Li, W.Li, K.Malakian, J.Wilhelm, D.H.H.Tsao
compound source
Molecule: Macrophage Metalloelastase
Chain: A
Fragment: Catalytic Domain (Unp Residues 100 To 263)
Synonym: Hme, Matrix Metalloproteinase-12, Mmp-12, Macrophage Elastase, Me;
Ec: 3.4.24.65
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Gene: Mmp12, Hme
Expression_system: Escherichia Coli
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_vector: Pet21a
methodSolution NMR
ligand DSV, ZN enzyme Hydrolase E.C.3.4.24.65 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceSolution structure of wild-type human matrix metalloproteinase 12 (MMP-12) in complex with a tight-binding inhibitor., Markus MA, Dwyer B, Wolfrom S, Li J, Li W, Malakian K, Wilhelm J, Tsao DH, J Biomol NMR. 2008 May;41(1):55-60. Epub 2008 Apr 19. PMID:18425585
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (751 Kb) [Save to disk]
  • LPC: Ligand-Protein Contacts for 2K2G
  • CSU: Contacts of Structural Units for 2K2G
  • Original NMR restraints for 2K2G from PDB
  • Retrieve 2K2G in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2K2G from S2C, [Save to disk]
  • View 2K2G in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2K2G
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 2K2G, from MSDmotif at EBI
  • Fold representative 2k2g from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2k2g_A] [2k2g]
  • SWISS-PROT database: [P39900]
  • Domain organization of [MMP12_HUMAN] by SWISSPFAM
  • Domain found in 2K2G: [ZnMc ] by SMART
  • Other resources with information on 2K2G
  • Community annotation for 2K2G at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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