2K35 Antimicrobial Protein date Apr 22, 2008
title Hydramacin-1: Structure And Antibacterial Activity Of A Peptide From The Basal Metazoan Hydra
authors S.Jung, A.J.Dingley, M.Stanisak, C.Gelhaus, T.Bosch, R.Podschun, M.Leippe, J.Gr Tzinger
compound source
Molecule: Hydramacin-1
Chain: A
Engineered: Yes
Organism_scientific: Hydra
Expression_system: Escherichia Coli
Expression_system_vector_type: Plasmid
Expression_system_vector: Pet32a
methodSolution NMR
note 2K35 is a representative structure
subcellular loc. Membrane localization by OPM: Secreted
out side
in side

Primary referenceHydramacin-1, structure and antibacterial activity of a protein from the basal metazoan Hydra., Jung S, Dingley AJ, Augustin R, Anton-Erxleben F, Stanisak M, Gelhaus C, Gutsmann T, Hammer MU, Podschun R, Bonvin AM, Leippe M, Bosch TC, Grotzinger J, J Biol Chem. 2009 Jan 16;284(3):1896-905. Epub 2008 Nov 19. PMID:19019828
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (296 Kb) [Save to disk]
  • CSU: Contacts of Structural Units for 2K35
  • Original NMR restraints for 2K35 from PDB
  • Retrieve 2K35 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2K35 from S2C, [Save to disk]
  • View 2K35 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2K35
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 2K35, from MSDmotif at EBI
  • Fold representative 2k35 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2k35] [2k35_A]
  • SWISS-PROT database: [B3RFR8]
  • Domain organization of [B3RFR8_HYDMA] by SWISSPFAM
  • Other resources with information on 2K35
  • Community annotation for 2K35 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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