2K6D Sh3 Domain Ubiquitin date Jul 07, 2008
title Cin85 Sh3-C Domain In Complex With Ubiquitin
authors J.Forman-Kay, I.Bezsonova
compound source
Molecule: Sh3 Domain-Containing Kinase-Binding Protein 1
Chain: A
Fragment: Cin85 Sh3-C Domain
Synonym: Cbl-Interacting Protein Of 85 Kda, Human Src Famil Binding Protein 1, Hsb-1, Cd2-Binding Protein 3, Cd2bp3;
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Sh3kbp1, Cin85
Expression_system: Escherichia Coli
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet28-B

Molecule: Ubiquitin
Chain: B
Fragment: Ubiquitin
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Rps27a, Uba80, Ubcep1, Uba52, Ubcep2, Ubb, Ubc
Expression_system: Escherichia Coli
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Petm11
methodSolution NMR
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceInteractions between the Three CIN85 SH3 Domains and Ubiquitin: Implications for CIN85 Ubiquitination., Bezsonova I, Bruce MC, Wiesner S, Lin H, Rotin D, Forman-Kay JD, Biochemistry. 2008 Aug 5. PMID:18680311
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (307 Kb) [Save to disk]
  • Biological Unit Coordinates (2k6d.pdb1.gz) 39 Kb
  • CSU: Contacts of Structural Units for 2K6D
  • Original NMR restraints for 2K6D from PDB
  • Retrieve 2K6D in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2K6D from S2C, [Save to disk]
  • View 2K6D in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2K6D
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 2K6D, from MSDmotif at EBI
  • Fold representative 2k6d from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2k6d] [2k6d_A] [2k6d_B]
  • SWISS-PROT database: [Q96B97] [P62988]
  • Domain organization of [SH3K1_HUMAN] [UBIQ_HUMAN] by SWISSPFAM
  • Domains found in 2K6D: [SH3] [UBQ ] by SMART
  • Other resources with information on 2K6D
  • Community annotation for 2K6D at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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