2K7F Replication Dna date Aug 10, 2008
title Haddock Calculated Model Of The Complex Between The Brct Reg P140 And Dsdna
authors M.Kobayashi, E.Ab, A.Bonvin, G.Siegal
compound source
Molecule: Replication Factor C Subunit 1
Chain: A
Fragment: Brct Domain (Unp Residues 375-480)
Synonym: Activator 1 Subunit 1, Replication Factor C Large Rf-C 140 Kda Subunit, Activator 1 140 Kda Subunit, A1 140 K Subunit, Activator 1 Large Subunit, Dna-Binding Protein Po-
Engineered: Yes
 Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Rfc1, Rfc140
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet20b

Molecule: 5'-D(Pdcpdgpdapdcpdcpdtpdcpdgpdapdgpda Da)-3';
Chain: B
Engineered: Yes
Other_details: Dna Strand
Synthetic: Yes

Molecule: 5'-D(Pdcpdtpdcpdgpdapdgpdgpdtpdcpdg)-3'
Chain: C
Engineered: Yes
Other_details: Dna Strand Primer
Synthetic: Yes
methodSolution NMR
Primary referenceStructure of the DNA-bound BRCA1 C-terminal region from human replication factor C p140 and model of the protein-DNA complex., Kobayashi M, Ab E, Bonvin AM, Siegal G, J Biol Chem. 2010 Mar 26;285(13):10087-97. Epub 2010 Jan 15. PMID:20081198
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (189 Kb) [Save to disk]
  • Biological Unit Coordinates (2k7f.pdb1.gz) 47 Kb
  • CSU: Contacts of Structural Units for 2K7F
  • Original NMR restraints for 2K7F from PDB
  • Retrieve 2K7F in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2K7F from S2C, [Save to disk]
    • View 2K7F in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 2K7F
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2K7F, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2k7f_B] [2k7f] [2k7f_A] [2k7f_C]
  • SWISS-PROT database: [P35251]
  • Domain organization of [RFC1_HUMAN] by SWISSPFAM
  • Domain found in 2K7F: [BRCT ] by SMART
    • Other resources with information on 2K7F
  • Community annotation for 2K7F at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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