2K7J Hydrolase date Aug 12, 2008
title Human Acylphosphatase(Acph) Surface Charge-Optimized
authors A.V.Gribenko, M.M.Patel, J.Liu, S.A.Mccallum, C.Wang, G.I.Makhata
compound source
Molecule: Acylphosphatase-1
Chain: A
Synonym: Acylphosphate Phosphohydrolase 1, Acylphosphatase, Common Type Isozyme, Acylphosphatase, Erythrocyte Isozyme;
Ec: 3.6.1.7
Engineered: Yes
Mutation: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Acyp1, Acype
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21(De3) Plyse
Expression_system_vector: Pgia
methodSolution NMR
ligand
enzyme Hydrolase E.C.3.6.1.7 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceRational stabilization of enzymes by computational redesign of surface charge-charge interactions., Gribenko AV, Patel MM, Liu J, McCallum SA, Wang C, Makhatadze GI, Proc Natl Acad Sci U S A. 2009 Feb 5. PMID:19196981
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (630 Kb) [Save to disk]
  • Biological Unit Coordinates (2k7j.pdb1.gz) 32 Kb
  • CSU: Contacts of Structural Units for 2K7J
  • Original NMR restraints for 2K7J from PDB
  • Retrieve 2K7J in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2K7J from S2C, [Save to disk]
  • View 2K7J in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2K7J
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2K7J, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2k7j] [2k7j_A]
  • SWISS-PROT database: [P07311]
  • Domain organization of [ACYP1_HUMAN] by SWISSPFAM
  • Other resources with information on 2K7J
  • Community annotation for 2K7J at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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