2K7W Apoptosis date Aug 27, 2008
title Bax Activation Is Initiated At A Novel Interaction Site
authors E.Gavathiotis, M.Suzuki, M.L.Davis, K.Pitter, G.H.Bird, S.G.Katz, H.C.Tu, H.Kim, E.H.Cheng, N.Tjandra, L.D.Walensky
compound source
Molecule: Apoptosis Regulator Bax
Chain: A
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Bax
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Ptyb1

Molecule: Bcl-2-Like Protein 11
Chain: B
Fragment: Bim Bh3 Domain
Synonym: Bcl2-Interacting Mediator Of Cell Death
Engineered: Yes

Synthetic: Yes
methodSolution NMR
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceBAX activation is initiated at a novel interaction site., Gavathiotis E, Suzuki M, Davis ML, Pitter K, Bird GH, Katz SG, Tu HC, Kim H, Cheng EH, Tjandra N, Walensky LD, Nature. 2008 Oct 23;455(7216):1076-81. PMID:18948948
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (758 Kb) [Save to disk]
  • CSU: Contacts of Structural Units for 2K7W
  • Original NMR restraints for 2K7W from PDB
  • Retrieve 2K7W in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2K7W from S2C, [Save to disk]
  • View 2K7W in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2K7W
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 2K7W, from MSDmotif at EBI
  • Fold representative 2k7w from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2k7w] [2k7w_A] [2k7w_B]
  • SWISS-PROT database: [O43521] [Q07812]
  • Belongs to the bcl-2 (bcl-2) family according to TCDB.
  • Belongs to the pro-apoptotic bcl-2-family protein bim (bim) family according to TCDB.
  • Domain organization of [B2L11_HUMAN] [BAX_HUMAN] by SWISSPFAM
  • Domain found in 2K7W: [BCL ] by SMART
  • Other resources with information on 2K7W
  • Community annotation for 2K7W at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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