2K84 Viral Protein date Sep 02, 2008
title Solution Structure Of The Equine Infectious Anemia Virus P9 Protein
authors A.Sharma, K.Bruns, R.Roeder, P.Henklein, J.Votteler, V.Wray, U.Sha
compound source
Molecule: P9
Chain: A
Fragment: Unp Residues 457-486
Engineered: Yes
 Synthetic: Yes
Other_details: The Peptide Is Chemically Synthesized.
methodSolution NMR
note 2K84 is a representative structure
Primary referenceSolution structure of the equine infectious anemia virus p9 protein: a rationalization of its different ALIX binding requirements compared to the analogous HIV-p6 protein., Sharma A, Bruns K, Roder R, Henklein P, Votteler J, Wray V, Schubert U, BMC Struct Biol. 2009 Dec 17;9:74. PMID:20015412
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (169 Kb) [Save to disk]
  • Biological Unit Coordinates (2k84.pdb1.gz) 9 Kb
  • CSU: Contacts of Structural Units for 2K84
  • Original NMR restraints for 2K84 from PDB
  • Retrieve 2K84 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2K84 from S2C, [Save to disk]
    • View 2K84 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 2K84
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2K84, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2k84_A] [2k84]
  • SWISS-PROT database: [P69732]
  • Domain organization of [GAG_EIAVY] by SWISSPFAM
    • Other resources with information on 2K84
  • Community annotation for 2K84 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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