2K85 Protein Binding date Sep 02, 2008
title P190-A Rhogap Ff1 Domain
authors R.Bonet, L.Ruiz, P.Martin-Malpartida, M.Macias
compound source
Molecule: Glucocorticoid Receptor Dna-Binding Factor 1
Chain: A
Fragment: Unp Residues 267-331
Synonym: Glucocorticoid Receptor Repression Factor 1, Grf-1 P190a, P190-A;
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Grlf1, Grf1, Kiaa1722
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21 (De3)
Expression_system_vector: Pet_trx
Other_details: Contains A His-Tag, A Thioredoxin Fusion Pro A Tev Cleavage-Site
methodSolution NMR
note 2K85 is a representative structure
Primary referenceNMR Structural Studies on Human p190-A RhoGAPFF1 Revealed that Domain Phosphorylation by the PDGF-Receptor alpha Requires Its Previous Unfolding., Bonet R, Ruiz L, Aragon E, Martin-Malpartida P, Macias MJ, J Mol Biol. 2009 Jun 5;389(2):230-7. Epub 2009 Apr 22. PMID:19393245
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (280 Kb) [Save to disk]
  • Biological Unit Coordinates (2k85.pdb1.gz) 19 Kb
  • CSU: Contacts of Structural Units for 2K85
  • Original NMR restraints for 2K85 from PDB
  • Retrieve 2K85 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2K85 from S2C, [Save to disk]
  • View 2K85 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2K85
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 2K85, from MSDmotif at EBI
  • Fold representative 2k85 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2k85_A] [2k85]
  • SWISS-PROT database: [Q9NRY4]
  • Domain organization of [GRLF1_HUMAN] by SWISSPFAM
  • Domain found in 2K85: [FF ] by SMART
  • Other resources with information on 2K85
  • Community annotation for 2K85 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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