2K8M Protein Transport date Sep 14, 2008
title S100a13-C2a Binary Complex Structure
authors S.K.Mohan, S.G.Rani, S.M.Kumar, C.Yu
compound source
Molecule: Putative Uncharacterized Protein
Chain: A, D
Fragment: Residues 1-128
Synonym: Syt1
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Dkfzp781d2042, Hcg_2016754, Syt1
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_vector_type: Vector
Expression_system_vector: Pgex

Molecule: Protein S100-A13
Chain: B, C
Synonym: S100 Calcium-Binding Protein A13
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: S100a13
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_vector_type: Vector
Expression_system_vector: Pgex
methodSolution NMR
Gene HCG
Gene
Ontology
ChainFunctionProcessComponent
A, D


C, B
  • mast cell degranulation

  • Primary referenceS100A13-C2A binary complex structure-a key component in the acidic fibroblast growth factor for the non-classical pathway., Mohan SK, Rani SG, Kumar SM, Yu C, Biochem Biophys Res Commun. 2009 Mar 13;380(3):514-9. Epub 2009 Jan 29. PMID:19284995
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (2796 Kb) [Save to disk]
  • Biological Unit Coordinates (2k8m.pdb1.gz) 141 Kb
  • CSU: Contacts of Structural Units for 2K8M
  • Likely Quarternary Molecular Structure file(s) for 2K8M
  • Original NMR restraints for 2K8M from PDB
  • Retrieve 2K8M in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2K8M from S2C, [Save to disk]
  • View 2K8M in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2K8M
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 2K8M, from MSDmotif at EBI
  • Fold representative 2k8m from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2k8m_A] [2k8m_C] [2k8m_B] [2k8m_D] [2k8m]
  • SWISS-PROT database: [Q99584] [P21579]
  • Belongs to the synaptosomal vesicle fusion pore (svf-pore) family according to TCDB.
  • Domain organization of [S10AD_HUMAN] [SYT1_HUMAN] by SWISSPFAM
  • Domains found in 2K8M: [C2] [S_100 ] by SMART
  • Other resources with information on 2K8M
  • Community annotation for 2K8M at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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