2K9Y Transferase date Oct 27, 2008
title Epha2 Dimeric Structure In The Lipidic Bicelle At Ph 5.0
authors M.L.Mayzel, E.V.Bocharov, P.E.Volynsky, A.S.Arseniev
compound source
Molecule: Ephrin Type-A Receptor 2
Chain: A, B
Fragment: Epha2_tm, Residues 523-563
Synonym: Tyrosine-Protein Kinase Receptor Eck, Epithelial Cell Kinase;
Ec: 2.7.10.1
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Epha2, Eck
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_vector_type: Vector
Expression_system_vector: Pgemex1
methodSolution NMR
ligand
enzyme Transferase E.C.2.7.10.1 BRENDA
Primary referenceLeft-handed dimer of EphA2 transmembrane domain: Helix packing diversity among receptor tyrosine kinases., Bocharov EV, Mayzel ML, Volynsky PE, Mineev KS, Tkach EN, Ermolyuk YS, Schulga AA, Efremov RG, Arseniev AS, Biophys J. 2010 Mar 3;98(5):881-9. PMID:20197042
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (361 Kb) [Save to disk]
  • CSU: Contacts of Structural Units for 2K9Y
  • Original NMR restraints for 2K9Y from PDB
  • Retrieve 2K9Y in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2K9Y from S2C, [Save to disk]
  • View 2K9Y in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2K9Y
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 2K9Y, from MSDmotif at EBI
  • Fold representative 2k9y from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2k9y_B] [2k9y_A] [2k9y]
  • SWISS-PROT database: [P29317]
  • Domain organization of [EPHA2_HUMAN] by SWISSPFAM
  • Other resources with information on 2K9Y
  • Community annotation for 2K9Y at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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