2KBO Hydrolase date Dec 04, 2008
title Structure, Interaction, And Real-Time Monitoring Of The Enzymatic Reaction Of Wild Type Apobec3g
authors A.Furukawa, T.Nagata, A.Matsugami, Y.Habu, R.Sugiyama, F.Hayashi, N.Kobayashi, S.Yokoyama, H.Takaku, M.Katahira
compound source
Molecule: Dna Dc->Du-Editing Enzyme Apobec-3g
Chain: A
Fragment: Unp Residues 193-384
Synonym: Apobec-Related Cytidine Deaminase, Arcd, Apobec- Related Protein, Arp-9, Cem-15, Cem15;
Ec: 3.5.4.-
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Mds019
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_vector_type: Vector
Expression_system_vector: Pet15(B)
methodSolution NMR
ligand ZN enzyme Hydrolase E.C.3.5.4 BRENDA

Primary referenceStructure, interaction and real-time monitoring of the enzymatic reaction of wild-type APOBEC3G., Furukawa A, Nagata T, Matsugami A, Habu Y, Sugiyama R, Hayashi F, Kobayashi N, Yokoyama S, Takaku H, Katahira M, EMBO J. 2009 Jan 15. PMID:19153609
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (529 Kb) [Save to disk]
  • LPC: Ligand-Protein Contacts for 2KBO
  • CSU: Contacts of Structural Units for 2KBO
  • Original NMR restraints for 2KBO from PDB
  • Retrieve 2KBO in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2KBO from S2C, [Save to disk]
  • View 2KBO in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2KBO
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 2KBO, from MSDmotif at EBI
  • Fold representative 2kbo from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2kbo_A] [2kbo]
  • SWISS-PROT database: [Q9HC16]
  • Domain organization of [ABC3G_HUMAN] by SWISSPFAM
  • Other resources with information on 2KBO
  • Community annotation for 2KBO at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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