2KBQ Structural Protein date Dec 05, 2008
title Solution Structure Of Harmonin N Terminal Domain
authors M.Zhang, L.Pan, J.Yan, L.Wu
compound source
Molecule: Harmonin
Chain: A
Fragment: N Terminal Domain, Residues 1-80
Synonym: Usher Syndrome Type-1c Protein, Autoimmune Enteropathy-Related Antigen Aie-75, Antigen Ny-Co-38ny-Co- 37, Pdz-73 Protein, Renal Carcinoma Antigen Ny-Ren-3;
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Harmonin
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Vector
Expression_system_vector: Pet32a
methodSolution NMR
Primary referenceAssembling stable hair cell tip link complex via multidentate interactions between harmonin and cadherin 23., Pan L, Yan J, Wu L, Zhang M, Proc Natl Acad Sci U S A. 2009 Mar 18. PMID:19297620
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (455 Kb) [Save to disk]
  • CSU: Contacts of Structural Units for 2KBQ
  • Original NMR restraints for 2KBQ from PDB
  • Retrieve 2KBQ in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2KBQ from S2C, [Save to disk]
  • View 2KBQ in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2KBQ
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 2KBQ, from MSDmotif at EBI
  • Fold representative 2kbq from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2kbq] [2kbq_A]
  • SWISS-PROT database: [Q9Y6N9]
  • Domain organization of [USH1C_HUMAN] by SWISSPFAM
  • Alignments of the sequence of 2KBQ with the sequences similar proteins can be viewed for 2KBQ's classification [USH1C_HUMAN] at ProtoMap. Click on "Neighbors List", then on the "See Alignments" button below the list.
  • A sequence distance tree ("phylogenetic tree") can be viewed for 1ACL's classification [USH1C_HUMAN] at ProtoMap. Click on the Cluster number.
  • Other resources with information on 2KBQ
  • Community annotation for 2KBQ at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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