2KBU Isomerase date Dec 08, 2008
title Nmr Solution Structure Of Pin1 Ww Domain Mutant With Beta Tu At Position 12
authors A.A.Fuller, G.Bhabha, D.A.Case
compound source
Molecule: Peptidyl-Prolyl Cis-Trans Isomerase Nima-Interact
Chain: A
Fragment: Unp Residues 6-39
Synonym: Rotamase Pin1, Ppiase Pin1
Ec: 5.2.1.8
Engineered: Yes
Mutation: Yes
Other_details: Residues Rssg Replaced By The Beta-Turn Mimi
 Synthetic: Yes
Other_details: Residues Rssg Replaced By The Beta-Turn Mimi
methodSolution NMR
ligand CFD enzyme Isomerase E.C.5.2.1.8 BRENDA
note 2KBU is a representative structure
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceEvaluating {beta}-turn mimics as {beta}-sheet folding nucleators., Fuller AA, Du D, Liu F, Davoren JE, Bhabha G, Kroon G, Case DA, Dyson HJ, Powers ET, Wipf P, Gruebele M, Kelly JW, Proc Natl Acad Sci U S A. 2009 Jun 18. PMID:19541614
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (128 Kb) [Save to disk]
  • Biological Unit Coordinates (2kbu.pdb1.gz) 9 Kb
  • LPC: Ligand-Protein Contacts for 2KBU
  • CSU: Contacts of Structural Units for 2KBU
  • Original NMR restraints for 2KBU from PDB
  • Retrieve 2KBU in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2KBU from S2C, [Save to disk]
    • View 2KBU in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 2KBU
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2KBU, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2kbu] [2kbu_A]
  • SWISS-PROT database: [Q13526]
  • Domain organization of [PIN1_HUMAN] by SWISSPFAM
  • Domain found in 2KBU: [WW ] by SMART
    • Other resources with information on 2KBU
  • Community annotation for 2KBU at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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