2KC3 Lipoprotein date Dec 15, 2008
title Nmr Solution Structure Of Complete Receptor Binding Domain Of Human Apolipoprotein E
authors J.Wang, A.Sivashanmugam
compound source
Molecule: Apolipoprotein E
Chain: A
Fragment: Unp Residues 19-201
Synonym: Apo-E
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Apoe
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet22b
methodSolution NMR
Gene
Ontology
ChainFunctionProcessComponent
A


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (1163 Kb) [Save to disk]
  • CSU: Contacts of Structural Units for 2KC3
  • Original NMR restraints for 2KC3 from PDB
  • Retrieve 2KC3 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2KC3 from S2C, [Save to disk]
  • View 2KC3 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2KC3
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 2KC3, from MSDmotif at EBI
  • Fold representative 2kc3 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2kc3] [2kc3_A]
  • SWISS-PROT database: [P02649]
  • Domain organization of [APOE_HUMAN] by SWISSPFAM
  • Alignments of the sequence of 2KC3 with the sequences similar proteins can be viewed for 2KC3's classification [APOE_HUMAN] at ProtoMap. Click on "Neighbors List", then on the "See Alignments" button below the list.
  • A sequence distance tree ("phylogenetic tree") can be viewed for 1ACL's classification [APOE_HUMAN] at ProtoMap. Click on the Cluster number.
  • Other resources with information on 2KC3
  • Community annotation for 2KC3 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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