2KE8 Dna date Jan 27, 2009
title Nmr Solution Structure Of Metal-Modified Dna
authors S.Johannsen, N.Duepre, D.Boehme, J.Mueller, R.K.O.Sigel
compound source
Molecule: Dna (5'-D(Tptpapaptptptp(D33)P(D33)P(D3 Papapaptptpapa)-3');
Chain: A, B
Engineered: Yes
 Synthetic: Yes
methodSolution NMR
ligand AG, D33 enzyme
Primary referenceSolution structure of a DNA double helix with consecutive metal-mediated base pairs., Johannsen S, Megger N, Bohme D, Sigel RK, Muller J, Nat Chem. 2010 Mar;2(3):229-34. Epub 2010 Jan 17. PMID:21124482
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (357 Kb) [Save to disk]
  • Biological Unit Coordinates (2ke8.pdb1.gz) 18 Kb
  • LPC: Ligand-Protein Contacts for 2KE8
  • CSU: Contacts of Structural Units for 2KE8
  • Original NMR restraints for 2KE8 from PDB
  • Retrieve 2KE8 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2KE8 from S2C, [Save to disk]
    • View 2KE8 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 2KE8
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2KE8, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2ke8_A] [2ke8] [2ke8_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 2KE8
  • Community annotation for 2KE8 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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