2KEL Transcription Repressor date Jan 30, 2009
title Structure Of The Transcription Regulator Svtr From The Hyperthermophilic Archaeal Virus Sirv1
authors F.Guilliere, A.Kessler, N.Peixeiro, G.Sezonov, D.Prangishvili, M.Delepierre, J.I.Guijarro
compound source
Molecule: Uncharacterized Protein 56b
Chain: A, B
Synonym: Svtr Protein
Engineered: Yes
Organism_scientific: Sulfolobus Islandicus Rod-Shaped Virus
Organism_common: Sirv-1
Organism_taxid: 157898
Gene: 56b, Gp08
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21 De3
Expression_system_vector: Pet30a
methodSolution NMR
note 2KEL is a representative structure
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceStructure, function, and targets of the transcriptional regulator SvtR from the hyperthermophilic archaeal virus SIRV1., Guilliere F, Peixeiro N, Kessler A, Raynal B, Desnoues N, Keller J, Delepierre M, Prangishvili D, Sezonov G, Guijarro JI, J Biol Chem. 2009 Aug 14;284(33):22222-37. Epub 2009 Jun 17. PMID:19535331
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (263 Kb) [Save to disk]
  • Biological Unit Coordinates (2kel.pdb1.gz) 26 Kb
  • CSU: Contacts of Structural Units for 2KEL
  • Original NMR restraints for 2KEL from PDB
  • Retrieve 2KEL in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2KEL from S2C, [Save to disk]
  • View 2KEL in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2KEL
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2KEL, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2kel_B] [2kel_A] [2kel]
  • SWISS-PROT database: [Q8QL46]
  • Domain organization of [Y56B_SIRV1] by SWISSPFAM
  • Other resources with information on 2KEL
  • Community annotation for 2KEL at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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