2KEM Hydrolase date Jan 30, 2009
title Extended Structure Of Citidine Deaminase Domain Of Apobec3g
authors E.Harjes, P.J.Gross, K.Chen, Y.Lu, K.Shindo, R.Nowarski, J.D.Gross, M.Kotler, R.S.Harris, H.Matsuo
compound source
Molecule: Dna Dc->Du-Editing Enzyme Apobec-3g
Chain: A
Fragment: Unp Residues 191-284
Synonym: Apobec-Related Cytidine Deaminase, Arcd, Apobec- Related Protein, Arp-9, Cem-15, Cem15;
Ec: 3.5.4.-
Engineered: Yes
Mutation: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Apobec3g
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21-De3(Ril)
Expression_system_vector_type: Vector
Expression_system_vector: Pgex6p1
methodSolution NMR
ligand ZN enzyme Hydrolase E.C.3.5.4 BRENDA

Primary referenceAn Extended Structure of the APOBEC3G Catalytic Domain Suggests a Unique Holoenzyme Model., Harjes E, Gross PJ, Chen KM, Lu Y, Shindo K, Nowarski R, Gross JD, Kotler M, Harris RS, Matsuo H, J Mol Biol. 2009 Apr 21. PMID:19389408
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (529 Kb) [Save to disk]
  • LPC: Ligand-Protein Contacts for 2KEM
  • CSU: Contacts of Structural Units for 2KEM
  • Original NMR restraints for 2KEM from PDB
  • Retrieve 2KEM in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2KEM from S2C, [Save to disk]
  • View 2KEM in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2KEM
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 2KEM, from MSDmotif at EBI
  • Fold representative 2kem from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2kem_A] [2kem]
  • SWISS-PROT database: [Q9HC16]
  • Domain organization of [ABC3G_HUMAN] by SWISSPFAM
  • Other resources with information on 2KEM
  • Community annotation for 2KEM at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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