2KFB Structural Protein date Feb 12, 2009
title The Structure Of The Cataract Causing P23t Mutant Of Human G Crystallin
authors J.Jung, I.L.Byeon, Y.Wang, J.King, A.M.Gronenborn
compound source
Molecule: Gamma-Crystallin D
Chain: A
Synonym: Gamma-D-Crystallin, Gamma-Crystallin 4
Engineered: Yes
Mutation: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Crygd, Cryg4
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21
Expression_system_variant: (De3)
Expression_system_vector: Pet16b
Other_details: Rosetta 2
methodSolution NMR
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceThe structure of the cataract causing P23T mutant of HgD crystallin exhibits local distinctive conformational and dynamic changes., Jung J, Byeon IJ, Wang Y, King J, Gronenborn A, Biochemistry. 2009 Feb 13. PMID:19216553
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (942 Kb) [Save to disk]
  • Biological Unit Coordinates (2kfb.pdb1.gz) 48 Kb
  • CSU: Contacts of Structural Units for 2KFB
  • Original NMR restraints for 2KFB from PDB
  • Retrieve 2KFB in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2KFB from S2C, [Save to disk]
  • View 2KFB in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2KFB
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 2KFB, from MSDmotif at EBI
  • Fold representative 2kfb from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2kfb] [2kfb_A]
  • SWISS-PROT database: [P07320]
  • Domain organization of [CRGD_HUMAN] by SWISSPFAM
  • Domain found in 2KFB: [XTALbg ] by SMART
  • Other resources with information on 2KFB
  • Community annotation for 2KFB at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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