2KFF Protein Binding date Feb 20, 2009
title Structure Of The C-Terminal Domain Of Ehd1 With Fnyestnpftak
authors F.Kieken, M.Jovic, M.Tonelli, N.Naslavsky, S.Caplan, P.Sorgen
compound source
Molecule: Eh Domain-Containing Protein 1
Chain: A
Fragment: Eh Domain, Residues 435-534
Synonym: Testilin, Hpast1
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Ehd1, Past, Past1, Cdabp0131
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_vector: Pgex6p-2

Molecule: Rab11-Fip2 Npf Peptide Fnyestnpftak
Chain: B
Engineered: Yes

Synthetic: Yes
Other_details: The Peptide Has Been Synthesized Chemically
methodSolution NMR
ligand CA enzyme
Primary referenceStructural insight into the interaction of proteins containing NPF, DPF, and GPF motifs with the C-terminal EH-domain of EHD1., Kieken F, Jovic M, Tonelli M, Naslavsky N, Caplan S, Sorgen PL, Protein Sci. 2009 Dec;18(12):2471-9. PMID:19798736
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (350 Kb) [Save to disk]
  • Biological Unit Coordinates (2kff.pdb1.gz) 35 Kb
  • LPC: Ligand-Protein Contacts for 2KFF
  • CSU: Contacts of Structural Units for 2KFF
  • Original NMR restraints for 2KFF from PDB
  • Retrieve 2KFF in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2KFF from S2C, [Save to disk]
  • View 2KFF in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2KFF
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 2KFF, from MSDmotif at EBI
  • Fold representative 2kff from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2kff_A] [2kff_B] [2kff]
  • SWISS-PROT database: [Q9H4M9]
  • Domain organization of [EHD1_HUMAN] by SWISSPFAM
  • Domain found in 2KFF: [EH ] by SMART
  • Other resources with information on 2KFF
  • Community annotation for 2KFF at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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