2KFT Transcription Protein Binding date Feb 27, 2009
title Nmr Solution Structure Of The First Phd Finger Domain Of Hum Autoimmune Regulator (Aire) In Complex With Histone H3(1-20 Peptide
authors S.Chakravarty, L.Zeng, M.Zhou
compound source
Molecule: Autoimmune Regulator
Chain: A
Fragment: Aire Phd-Type 1 Zinc Finger
Synonym: Autoimmune Polyendocrinopathy Candidiasis Ectoderm Dystrophy Protein, Apeced Protein;
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Aire, Apeced
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21(De3)
Expression_system_vector: Pgex-4t3

Molecule: Histone H3
Chain: B
Fragment: Histone H3 1-20cys N-Terminal Domain
Engineered: Yes

Synthetic: Yes
methodSolution NMR
ligand ZN enzyme
Primary referenceStructure and Site-Specific Recognition of Histone H3 by the PHD Finger of Human Autoimmune Regulator., Chakravarty S, Zeng L, Zhou MM, Structure. 2009 May 13;17(5):670-9. PMID:19446523
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (384 Kb) [Save to disk]
  • Biological Unit Coordinates (2kft.pdb1.gz) 19 Kb
  • LPC: Ligand-Protein Contacts for 2KFT
  • CSU: Contacts of Structural Units for 2KFT
  • Original NMR restraints for 2KFT from PDB
  • Retrieve 2KFT in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2KFT from S2C, [Save to disk]
  • View 2KFT in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2KFT
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2KFT, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2kft] [2kft_A] [2kft_B]
  • SWISS-PROT database: [O43918]
  • Domain organization of [AIRE_HUMAN] by SWISSPFAM
  • Domain found in 2KFT: [PHD ] by SMART
  • Other resources with information on 2KFT
  • Community annotation for 2KFT at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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