2KFY Rna Binding Protein Rna date Mar 02, 2009
title Nmr Structure Of The First Qrrm Of Hnrnp F In Complex With A Tract Rna
authors F.H.T.Allain, C.Dominguez
compound source
Molecule: Heterogeneous Nuclear Ribonucleoprotein F
Chain: A
Engineered: Yes
 Organism_scientific: Homo Sapiens
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 511693
Expression_system_strain: Bl21 Codon Plus

Molecule: 5'-R(Apgpgpgpapu)-3'
Chain: B
Synonym: Hnrnp F, Nucleolin-Like Protein Mcs94-1
Engineered: Yes
Synthetic: Yes
methodSolution NMR
note 2KFY is a representative structure
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceStructural basis of G-tract recognition and encaging by hnRNP F quasi-RRMs., Dominguez C, Fisette JF, Chabot B, Allain FH, Nat Struct Mol Biol. 2010 Jul;17(7):853-61. Epub 2010 Jun 6. PMID:20526337
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (576 Kb) [Save to disk]
  • Biological Unit Coordinates (2kfy.pdb1.gz) 30 Kb
  • CSU: Contacts of Structural Units for 2KFY
  • Original NMR restraints for 2KFY from PDB
  • Retrieve 2KFY in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2KFY from S2C, [Save to disk]
    • View 2KFY in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 2KFY
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2KFY, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2kfy] [2kfy_A] [2kfy_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 2KFY: [RRM ] by SMART
    • Other resources with information on 2KFY
  • Community annotation for 2KFY at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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