2KG5 Signaling Protein date Mar 05, 2009
title Nmr Solution Structure Of Arap3-Sam
authors M.Leone, M.Pellecchia
compound source
Molecule: Arf-Gap, Rho-Gap Domain, Ank Repeat And Ph Domain Containing Protein 3;
Chain: A
Fragment: Sam Domain, Residues 1-80
Synonym: Centaurin-Delta-3, Cnt-D3
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Arap3, Centd3
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_vector: Pet15b
methodSolution NMR
Primary referenceThe Sam domain of the lipid phosphatase Ship2 adopts a common model to interact with Arap3-Sam and EphA2-Sam., Leone M, Cellitti J, Pellecchia M, BMC Struct Biol. 2009 Sep 18;9:59. PMID:19765305
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (486 Kb) [Save to disk]
  • Biological Unit Coordinates (2kg5.pdb1.gz) 24 Kb
  • CSU: Contacts of Structural Units for 2KG5
  • Original NMR restraints for 2KG5 from PDB
  • Retrieve 2KG5 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2KG5 from S2C, [Save to disk]
  • View 2KG5 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2KG5
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2KG5, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2kg5] [2kg5_A]
  • SWISS-PROT database: [Q8WWN8]
  • Domain organization of [ARAP3_HUMAN] by SWISSPFAM
  • Domain found in 2KG5: [SAM ] by SMART
  • Other resources with information on 2KG5
  • Community annotation for 2KG5 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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