2KH2	Cytokine Immune System	date	Mar 23, 2009
title	Solution Structure Of A Scfv-Il-1b Complex
authors	I.C.Wilkinson, C.J.Hall, V.Veverka, F.W.Muskett, P.E.Stephens, R. A.J.Henry, M.D.Carr
compound		source
Molecule: Interleukin-1 Beta Chain: A Synonym: Il-1 Beta, Catabolin Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Il1b, Il1f2 Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_vector_type: Plasmid Expression_system_plasmid: Pet-21
Molecule: Scfv Chain: B Engineered: Yes		Organism_scientific: Mus Musculus Organism_common: Mouse Organism_taxid: 10090 Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_vector_type: Plasmid Expression_system_plasmid: Pttod
method	Solution NMR
Gene Ontology	Chain Function Process Component A
Primary reference	High resolution NMR-based model for the structure of a scFv-IL-1beta complex: potential for NMR as a key tool in therapeutic antibody design and development., Wilkinson IC, Hall CJ, Veverka V, Shi JY, Muskett FW, Stephens PE, Taylor RJ, Henry AJ, Carr MD, J Biol Chem. 2009 Nov 13;284(46):31928-35. Epub 2009 Sep 23. PMID:19776018

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (8048 Kb) [Save to disk] Biological Unit Coordinates (2kh2.pdb1.gz) 105 Kb CSU: Contacts of Structural Units for 2KH2 Original NMR restraints for 2KH2 from PDB Retrieve 2KH2 in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 2KH2 from S2C, [Save to disk]

View 2KH2 in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 2KH2

Ramachandran plot from PDBSum

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 2KH2, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [2kh2_B] [2kh2] [2kh2_A] SWISS-PROT database: [P01584] Belongs to the interleukin 1 (il1) family according to TCDB. Domain organization of [IL1B_HUMAN] by SWISSPFAM Domains found in 2KH2: [IGv] [IL1 ] by SMART

Other resources with information on 2KH2

Community annotation for 2KH2 at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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