2KH2 Cytokine Immune System date Mar 23, 2009
title Solution Structure Of A Scfv-Il-1b Complex
authors I.C.Wilkinson, C.J.Hall, V.Veverka, F.W.Muskett, P.E.Stephens, R. A.J.Henry, M.D.Carr
compound source
Molecule: Interleukin-1 Beta
Chain: A
Synonym: Il-1 Beta, Catabolin
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Il1b, Il1f2
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet-21

Molecule: Scfv
Chain: B
Engineered: Yes

Organism_scientific: Mus Musculus
Organism_common: Mouse
Organism_taxid: 10090
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pttod
methodSolution NMR

Primary referenceHigh resolution NMR-based model for the structure of a scFv-IL-1beta complex: potential for NMR as a key tool in therapeutic antibody design and development., Wilkinson IC, Hall CJ, Veverka V, Shi JY, Muskett FW, Stephens PE, Taylor RJ, Henry AJ, Carr MD, J Biol Chem. 2009 Nov 13;284(46):31928-35. Epub 2009 Sep 23. PMID:19776018
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (8048 Kb) [Save to disk]
  • Biological Unit Coordinates (2kh2.pdb1.gz) 105 Kb
  • CSU: Contacts of Structural Units for 2KH2
  • Original NMR restraints for 2KH2 from PDB
  • Retrieve 2KH2 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2KH2 from S2C, [Save to disk]
  • View 2KH2 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2KH2
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2KH2, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2kh2_B] [2kh2] [2kh2_A]
  • SWISS-PROT database: [P01584]
  • Belongs to the interleukin 1 (il1) family according to TCDB.
  • Domain organization of [IL1B_HUMAN] by SWISSPFAM
  • Domains found in 2KH2: [IGv] [IL1 ] by SMART
  • Other resources with information on 2KH2
  • Community annotation for 2KH2 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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