2KHJ Ribosomal Protein date Apr 07, 2009
title Nmr Structure Of The Domain 6 Of The E. Coli Ribosomal Prote
authors P.Salah, M.Bisaglia, P.Aliprandi, M.Uzan, C.Sizun, F.Bontems
compound source
Molecule: 30s Ribosomal Protein S1
Chain: A
Fragment: Unp Residues 441-528
Engineered: Yes
 Organism_scientific: Escherichia Coli
Organism_taxid: 562
Gene: Rpsa, Ssyf, B0911, Jw0894
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet15b
methodSolution NMR
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceProbing the relationship between Gram-negative and Gram-positive S1 proteins by sequence analysis., Salah P, Bisaglia M, Aliprandi P, Uzan M, Sizun C, Bontems F, Nucleic Acids Res. 2009 Sep;37(16):5578-88. Epub 2009 Jul 15. PMID:19605565
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (280 Kb) [Save to disk]
  • Biological Unit Coordinates (2khj.pdb1.gz) 23 Kb
  • CSU: Contacts of Structural Units for 2KHJ
  • Original NMR restraints for 2KHJ from PDB
  • Retrieve 2KHJ in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2KHJ from S2C, [Save to disk]
    • View 2KHJ in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 2KHJ
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2KHJ, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2khj_A] [2khj]
  • SWISS-PROT database: [P0AG67]
  • Domain organization of [RS1_ECOLI] by SWISSPFAM
  • Domain found in 2KHJ: [S1 ] by SMART
    • Other resources with information on 2KHJ
  • Community annotation for 2KHJ at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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