2KHT Antimicrobial Protein date Apr 11, 2009
title Nmr Structure Of Human Alpha Defensin Hnp-1
authors Y.Zhang, S.Li, T.F.Doherty, J.Lubkowski, W.Lu, J.Li, C.Barinka, M.H
compound source
Molecule: Neutrophil Defensin 1
Chain: A
Fragment: Residues 65-94
Synonym: Hnp-1, Hp-1, Hp1, Defensin, Alpha 1, Hp 1-56, Neut Defensin 2, Hnp-2, Hp-2, Hp2;
Engineered: Yes
 Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Def1, Defa1, Defa2, Mrs
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pgex-2t
methodSolid-State NMR
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceResonance Assignment and Three-Dimensional Structure Determination of a Human alpha-Defensin, HNP-1, by Solid-State NMR., Zhang Y, Doherty T, Li J, Lu W, Barinka C, Lubkowski J, Hong M, J Mol Biol. 2010 Jan 22. PMID:20097206
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (81 Kb) [Save to disk]
  • Biological Unit Coordinates (2kht.pdb1.gz) 8 Kb
  • CSU: Contacts of Structural Units for 2KHT
  • Original NMR restraints for 2KHT from PDB
  • Retrieve 2KHT in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2KHT from S2C, [Save to disk]
    • View 2KHT in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 2KHT
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2KHT, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2kht_A] [2kht]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 2KHT: [DEFSN ] by SMART
    • Other resources with information on 2KHT
  • Community annotation for 2KHT at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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