2KHX Gene Regulation,Nuclear Protein date Apr 13, 2009
title Drosha Double-Stranded Rna Binding Motif
authors G.A.Mueller, M.Miller, M.Ghosh, E.F.Derose, R.E.London, T.Hall
compound source
Molecule: Ribonuclease 3
Chain: A
Fragment: Residues 1259-1337
Synonym: Ribonuclease III, Rnase III, Drosha, P241
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Rnasen, Rn3, Rnase3l
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet21c
methodSolution NMR
enzyme Hydrolase E.C. BRENDA
Primary referenceSolution structure of the Drosha double-stranded RNA-binding domain., Mueller GA, Miller MT, Derose EF, Ghosh M, London RE, Hall TM, Silence. 2010 Jan 12;1(1):2. PMID:20226070
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (207 Kb) [Save to disk]
  • Biological Unit Coordinates (2khx.pdb1.gz) 21 Kb
  • CSU: Contacts of Structural Units for 2KHX
  • Original NMR restraints for 2KHX from PDB
  • Retrieve 2KHX in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2KHX from S2C, [Save to disk]
  • View 2KHX in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2KHX
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 2KHX, from MSDmotif at EBI
  • Fold representative 2khx from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2khx] [2khx_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 2KHX: [DSRM ] by SMART
  • Other resources with information on 2KHX
  • Community annotation for 2KHX at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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