2KJM Rna Binding Protein date Jun 03, 2009
title Solution Structure Of Slbp Rna Binding Domain Fragment
authors R.Thapar
compound source
Molecule: Histone Rna Hairpin-Binding Protein
Chain: A
Fragment: Unp Residues 129-158
Synonym: Histone Stem-Loop-Binding Protein
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Slbp, Hbp
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_vector_type: Plasmid
methodSolution NMR
note 2KJM is a representative structure
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceInteraction of the histone mRNA hairpin with stem-loop binding protein (SLBP) and regulation of the SLBP-RNA complex by phosphorylation and proline isomerization., Zhang M, Lam TT, Tonelli M, Marzluff WF, Thapar R, Biochemistry. 2012 Apr 17;51(15):3215-31. Epub 2012 Apr 3. PMID:22439849
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (203 Kb) [Save to disk]
  • Biological Unit Coordinates (2kjm.pdb1.gz) 11 Kb
  • CSU: Contacts of Structural Units for 2KJM
  • Original NMR restraints for 2KJM from PDB
  • Retrieve 2KJM in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2KJM from S2C, [Save to disk]
  • View 2KJM in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2KJM
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2KJM, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2kjm] [2kjm_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 2KJM
  • Community annotation for 2KJM at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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