2KK0 Transcription Regulator date Jun 14, 2009
title Solution Structure Of Dead Ringer-Like Protein 1 (At-Rich In Domain-Containing Protein 3a) From Homo Sapiens, Northeast Genomics Consortium (Nesg) Target Hr4394c
authors G.Liu, D.Wang, C.Nwosu, L.Owens, R.Xiao, J.Liu, M.C.Baran, G.Swapna T.B.Acton, B.Rost, G.T.Montelione, Northeast Structural Genomi Consortium (Nesg)
compound source
Molecule: At-Rich Interactive Domain-Containing Protein 3a
Chain: A
Fragment: Arid Domain
Synonym: Arid Domain-Containing Protein 3a, Dead Ringer-Lik 1, B-Cell Regulator Of Igh Transcription, Bright, E2f-Bindi 1;
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Arid3a, Dril1, Dril3, Drx, E2fbp1
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_vector: Pet 14-15c
methodSolution NMR
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceSolution NMR structure of the ARID domain of human AT-rich interactive domain-containing protein 3A: a human cancer protein interaction network target., Liu G, Huang YJ, Xiao R, Wang D, Acton TB, Montelione GT, Proteins. 2010 Jul;78(9):2170-5. PMID:20455271
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (924 Kb) [Save to disk]
  • Biological Unit Coordinates (2kk0.pdb1.gz) 47 Kb
  • CSU: Contacts of Structural Units for 2KK0
  • Original NMR restraints for 2KK0 from PDB
  • Retrieve 2KK0 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2KK0 from S2C, [Save to disk]
  • View 2KK0 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2KK0
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 2KK0, from MSDmotif at EBI
  • Fold representative 2kk0 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2kk0] [2kk0_A]
  • SWISS-PROT database: [Q99856]
  • Domain organization of [ARI3A_HUMAN] by SWISSPFAM
  • Domains found in 2KK0: [ARID] [BRIGHT ] by SMART
  • Other resources with information on 2KK0
  • Community annotation for 2KK0 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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