2KKW Lipid Binding Protein date Jun 29, 2009
title Slas-Micelle Bound Alpha-Synuclein
authors J.Rao, C.C.Jao, B.Hegde, R.Langen, T.S.Ulmer
compound source
Molecule: Alpha-Synuclein
Chain: A
Synonym: Non-A Beta Component Of Ad Amyloid, Non-A4 Compone Amyloid Precursor, Nacp;
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Snca, Nacp, Park1
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet-42
methodSolution NMR; Epr
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceA combinatorial NMR and EPR approach for evaluating the structural ensemble of partially folded proteins., Rao JN, Jao CC, Hegde BG, Langen R, Ulmer TS, J Am Chem Soc. 2010 Jun 30;132(25):8657-68. PMID:20524659
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (1165 Kb) [Save to disk]
  • Biological Unit Coordinates (2kkw.pdb1.gz) 35 Kb
  • CSU: Contacts of Structural Units for 2KKW
  • Original NMR restraints for 2KKW from PDB
  • Retrieve 2KKW in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2KKW from S2C, [Save to disk]
  • View 2KKW in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2KKW
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 2KKW, from MSDmotif at EBI
  • Fold representative 2kkw from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2kkw_A] [2kkw]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Alignments of the sequence of 2KKW with the sequences similar proteins can be viewed for 2KKW's classification at ProtoMap. Click on "Neighbors List", then on the "See Alignments" button below the list.
  • A sequence distance tree ("phylogenetic tree") can be viewed for 1ACL's classification at ProtoMap. Click on the Cluster number.
  • Other resources with information on 2KKW
  • Community annotation for 2KKW at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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