2KLZ Hydrolase date Jul 12, 2009
title Solution Structure Of The Tandem Uim Domain Of Ataxin-3 Comp Ubiquitin
authors C.Zhou, A.Song, D.Lin, H.Hu
compound source
Molecule: Ataxin-3
Chain: A
Fragment: Uim1 And Uim 2 Domain, Unp Residues 222-263
Synonym: Machado-Joseph Disease Protein 1, Spinocerebellar Type 3 Protein;
Ec: 3.4.22.-
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_vector_type: Vector
Expression_system_vector: Pgbtnh
methodSolution NMR
ligand
enzyme Hydrolase E.C.3.4.22 BRENDA
note 2KLZ is a representative structure
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (120 Kb) [Save to disk]
  • CSU: Contacts of Structural Units for 2KLZ
  • Original NMR restraints for 2KLZ from PDB
  • Retrieve 2KLZ in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2KLZ from S2C, [Save to disk]
  • View 2KLZ in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2KLZ
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 2KLZ, from MSDmotif at EBI
  • Fold representative 2klz from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2klz_A] [2klz]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 2KLZ: [UIM ] by SMART
  • Alignments of the sequence of 2KLZ with the sequences similar proteins can be viewed for 2KLZ's classification at ProtoMap. Click on "Neighbors List", then on the "See Alignments" button below the list.
  • A sequence distance tree ("phylogenetic tree") can be viewed for 1ACL's classification at ProtoMap. Click on the Cluster number.
  • Other resources with information on 2KLZ
  • Community annotation for 2KLZ at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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