2KN1 Signaling Protein date Aug 11, 2009
title Solution Nmr Structure Of Bcma
authors M.Pellegrini, L.Willen, M.Perroud, D.Krushinskie, K.Strauch, H.Cu Y.Sun, E.S.Day, P.Schneider, T.S.Zheng
compound source
Molecule: Tumor Necrosis Factor Receptor Superfamily Member
Chain: A
Fragment: Residues 2-50
Synonym: B-Cell Maturation Protein
Engineered: Yes
Synthetic: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Other_details: Solid Phase Peptide Synthesis
methodSolution NMR
ligand CY1, NH2 enzyme
Primary referenceStructure of the extracellular domains of human and Xenopus Fn14: implications in the evolution of TWEAK and Fn14 interactions., Pellegrini M, Willen L, Perroud M, Krushinskie D, Strauch K, Cuervo H, Day ES, Schneider P, Zheng TS, FEBS J. 2013 Feb 25. doi: 10.1111/febs.12206. PMID:23438059
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (256 Kb) [Save to disk]
  • Biological Unit Coordinates (2kn1.pdb1.gz) 13 Kb
  • LPC: Ligand-Protein Contacts for 2KN1
  • CSU: Contacts of Structural Units for 2KN1
  • Original NMR restraints for 2KN1 from PDB
  • Retrieve 2KN1 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2KN1 from S2C, [Save to disk]
  • View 2KN1 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2KN1
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 2KN1, from MSDmotif at EBI
  • Fold representative 2kn1 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2kn1] [2kn1_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 2KN1
  • Community annotation for 2KN1 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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